PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026880-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 108aa    MW: 12001.3 Da    PI: 9.7855
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026880-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.4e-092063344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         WT+   +++ +a +++ ++   +W  +a+ +g g+++++++ ++
  WALNUT_00026880-RA 20 TWTPKQNKQFEKALALYDKDtpdRWQNVAKAVG-GKSAEEVRKHY 63
                        7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.4E-81769IPR001005SANT/Myb domain
SuperFamilySSF466892.69E-131975IPR009057Homeodomain-like
PROSITE profilePS500906.2951967IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.5E-52068IPR009057Homeodomain-like
PfamPF002496.3E-82063IPR001005SANT/Myb domain
CDDcd001671.33E-52763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MASSPFTSSS GSNCSSTSST WTPKQNKQFE KALALYDKDT PDRWQNVAKA VGGKSAEEVR  60
KHYEILVQDL INIESGQVPL PNYKTTGSNS RSGSGDEQIR RMKNLRLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-34211071192RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.18e-46PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1731e-44RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A078CDZ94e-44A0A078CDZ9_BRANA; BnaC06g36010D protein
STRINGVIT_03s0063g02670.t011e-41(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-41RAD-like 6